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Cancer Risk Prediction Tool
Risk prediction models for lung cancer. Taiwan Never-smoking females Lung cancer risk calculator. [NHRI] | |
Downloadable Analysis Tools
A fast and accurate RNA-seq mapper with a divide and conquer strategy |
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A software platform for GEnome-scale Metabolic model Simulation, Reconstruction and Visualization | |
Modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem |
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An ultra-fast sequence alignment algorithm for intra-species genome comparison |
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A high quality biomedical annotation corpus for the development of natural language processing technique | |
A divide-and-conquer algorithm for NGS read mapping with high error tolerance |
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Prediction tool of kinase-specific phosphorylation sites |
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An efficient and versatile approach for short-read mapping and variant identification using high-throughput sequenced data. |
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An automatic neuronal morphology quantification method. |
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corpus: A groundbreaking biomedical PPIE corpus that comprises gene pairs and diverse relation types, including 12 positive classes with corresponding negative counterparts |
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The Plant Promoter Analysis Navigator is a practical resource for detecting transcription factor binding sites (TFBSs) based on TFBS position weight matrices (PWMs) collected from public resources and experimental ChIP-seq datasets. PlantPAN also provides the TF information and their corresponding TFBSs, deposition of histone marks, CpG islands, and tandem repeats on plant promoter sequences. |
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A highly accurate Metagenomic strain-level profiling tool |
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A transformer-based prediction tool for AMPs with different functional activities |
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Functional Genomics
Homology & Similarity
BLAST against customized database | |
BLAST against PDB protein databank at NTHU | |
BLAST against Motif/Domain database at NTHU | |
Miscellaneous Tools
Sequence Analysis
An Antimicrobial Peptide Predictor in Deep Learning. | ||
Chameleon Sequence Finder: Retrive a small peptide fragment sequence from a collection of PDB sequences | ||
Contig Integrator for Sequence Assembly of Bacterial Genomes | ||
FamPipe is a comprehensive analysis pipeline for family data. Monitoring the antigenic evolution of human influenza A viruses to understand how and when viruses escape from existing immunity [NHRI] | ||
Monitoring of human influenza variants | ||
Identification of cytotoxic T lymphocyte epitopes for swine viruses | ||
IGOF implements three powerful gene-based gene-gene interaction tests for common, low-frequency, and common with low-frequency variant pairs in case-control studies using next-generation sequencing data. [NHRI] | ||
Using Deconvolution Approach to Reveal the Immuno-Microenvironment of Complex Tissues and Tumors from the Transcriptomics | ||
SeqCP
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A sequence-based algorithm for searching circularly permuted proteins |
Structural Analysis ( Structural Biology tools/database )
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