Home / Tools
Cancer Risk Prediction Tool
Risk prediction models for lung cancer. Taiwan Never-smoking females Lung cancer risk calculator. [NHRI] | |
Downloadable Analysis Tools
A fast and accurate RNA-seq mapper with a divide and conquer strategy |
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A software platform for GEnome-scale Metabolic model Simulation, Reconstruction and Visualization | |
Modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem |
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An ultra-fast sequence alignment algorithm for intra-species genome comparison |
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A high quality biomedical annotation corpus for the development of natural language processing technique |
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An automated analysis tool for label-free quantitative proteomics [IASL] |
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Generic Evolutionary Method for molecular DOCKing |
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Integrated Service of Structure Similarity Search Aided by Ramachandran Sequential Transformation |
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A divide-and-conquer algorithm for NGS read mapping with high error tolerance |
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Prediction tool of kinase-specific phosphorylation sites |
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An automated tool for glycopeptide identification and glycan composition determination [IASL] |
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An efficient and versatile approach for short-read mapping and variant identification using high-throughput sequenced data. |
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An automated quantitation tool, which utilizes XICs acquired from isotope labeling techniques for quantitation analysis [IASL] |
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MetastasisWay attempts to construct metastatic pathways by integrating the extensive information within the large collection of research papers. [IASL] |
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An automated data analysis tool for multiplexed protein quantitation based on iTRAQ labeling method [IASL] |
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An automatic neuronal morphology quantification method. |
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The Plant Promoter Analysis Navigator is a practical resource for detecting transcription factor binding sites (TFBSs) based on TFBS position weight matrices (PWMs) collected from public resources and experimental ChIP-seq datasets. PlantPAN also provides the TF information and their corresponding TFBSs, deposition of histone marks, CpG islands, and tandem repeats on plant promoter sequences. |
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Software for two-channel cell-based RNAi data | |
A highly accurate Metagenomic strain-level profiling tool |
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A transformer-based prediction tool for AMPs with different functional activities |
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Functional Genomics
Homology & Similarity
BLAST Search at NCKU
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. This is a customized BLAST tool supported by NCKU bioinformatics center. |
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BLAST against customized database | |
BLAST against PDB protein databank at NTHU | |
BLAST against Motif/Domain database at NTHU | |
Miscellaneous Tools
Phylogenetic Analysis
Sequence Analysis
Structural Analysis ( Structural Biology tools/database )
Topology Prediction
The protein KNOT web server | ||
Go to Tools Download page
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