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Manual| CircNet | Emerging evidence indicates that circRNAs exert a new layer of post-transcriptional regulation of gene expression [NYCU] We constructed the CircNet database that provides the following resources: (i) novel circRNAs, (ii) integrated miRNA-target networks, (iii) expression profiles of circRNA isoforms, (iv) genomic annotations of circRNA isoforms (e.g. 282 948 exon positions), and (v) sequences of circRNA isoforms. |
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| CirNet | A database of circular RNAs derived from transcriptome sequencing data | |
| A database of copy number variations across vertebrate genomes. [Sinica, NHRI] CNVVdb is a web interface for identification of potential inter-species CNV information by finding duplicated regions within a genome (paralogues) and between different genomes (orthologues). |
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| Gene-Based Repetitive Element Database | ||
| Genome Profile Database [NTHU] GPDB has been developed to provide and compare features of the fully sequenced organisms in a graphic and easy-reading way. We provide some "Genome Profile", develop on-line graphic browsing interface and use hierarchical clustering method to compare and view the difference between these organisms. |
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| MarkerHub | Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy. | |
| metasquare_db | Metasquare Database 1.0 for Metagenomics in 16s rRNA [Sinica, NHRI] | |
| MethHC | A Database of DNA Methylation and gene expression in Human Cancer | |
| Genomic Maps for microRNA [NYCU] MicroRNAs (miRNAs) are small noncoding RNA molecules, which are capable of negatively regulating gene expression to control many cellular mechanisms. In this work, we develop a resource, miRNAMap 2.0, to collect experimental verified microRNAs and experimental verified miRNA target genes in human, mouse, rat, and other metazoan genomes. |
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Database of microRNA Transcription Start Site |
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miRNA-target Interactions Database |
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| Regulatory RNA Motifs and Elements Database [NYCU] RegRNA is an integrated web server for identifying the homologs of Regulatory RNA motifs and elements against an input mRNA sequence. Both sequence homologs or structural homologs of regulatory RNA motifs can be identified. |
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| Screening for low complexity DNA sequences and interspersed repeats | |
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| SNP | SNP value-added database | |
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Tumor Associated Gene Database |
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| The Binding Element Searching Tool | |
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Database of Anti-Microbial Peptides |
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| Database of Protein Post-Translational Modifications | ||
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Database for plant metabolic pathways analysis |
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| Drosophila Database of Protein Interactomes | |
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| H. pylori Database of protein interactomes | |
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A website provides biomedical recognition function and corresponding datasets. |
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A liver cancer biomarker interactive curation system combining text mining and expert annotations |
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Database-assisted platform for discovering protein phosphorylation regulatory networks |
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This database serves as a research tool and an overview on variations of disease candidate genes [IASL] |
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Database-assisted platform for discovering protein ubiquitination regulatory networks |
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A web application for annotating biomedical entities and relations [IASL] |
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| Circular Permutation Database | ||
| Disulfide Proteins Database | ||
| Structural Genomics Databases of Helicobacter pylori | ||
| Structural Genomics Databases of Klebsiella pneumoniae | ||
| Structural Genomics Databases of Stenotrophomonas maltophili | ||
| Structural Genomics Databases of Xanthomonas campestris | ||