gcg2 1% fetch tfsites.dat
Fetch copies GCG sequences or data files from the GCG database into your directory or displays them on your terminal screen.
tfsites.dat
gcg2 2% findpatterns -dat=tfsites.dat
FindPatterns identifies sequences that contain short patterns like GAATTC or YRYRYRYR. You can define the patterns ambiguously and allow mismatches. You can provide the patterns in a file or simply type them in from the terminal.
FINDPATTERNS in what sequence(s) ? gb:m25181
What should I call the output file (* m25181.find *) ?
gcg2 13% more m25181.find
! FINDPATTERNS on gb:m25181 allowing 0 mismatches
! Using patterns from: tfsites.dat November 17, 2000 11:09 ..
M25181 ck: 2866 len: 68 ! M25181 D.melanogaster Dde I-Taq I f ragment of 5S DNA, 3' end. 4/1993
GCN4-ILV1.3 AAGTCA
6: ACTAT AAGTCA ATACG
GCN4-ILV1.3 /Rev TGACTT
23: GTATC TGACTT TATCT
........................................
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