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Comparative Analysis of Protein Interactions for HIV-1 [NHRI] |
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Circular Permutation Database [NTHU] |
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Protein Post-Translational Modification Database [NCTU] |
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Drosophila Database of Protein Interactomes [NHRI] |
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Genome Profile Database [NTHU] |
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H. pylori Database of protein interactomes [NHRI] |
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| Structural Genomics Databases of Helicobacter pylori [NTHU] | |
| Structural Genomics Databases of Klebsiella pneumoniae [NTHU] | |
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Genomic Maps for microRNA [NCTU] |
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Database of microRNA Transcription Start Site [NCTU] |
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miRNA-target Interactions Database [NCTU] |
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Regulatory RNA Motifs and Elements Database [NCTU] |
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| Screening for low complexity DNA sequences and interspersed repeats [mirror at NCKU] | |
| Structural Genomics Databases of Stenotrophomonas maltophili [NTHU] | |
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SNP value-added database [NCKU] |
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Disulfide Proteins Database [NCTU] |
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Tumor Associated Gene Database [NCKU] |
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The Binding Element Searching Tool [NCKU] |
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Taiwan Polymorphism Marker Database [NHRI] |
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| Structural Genomics Databases of Xanthomonas campestris [NTHU] | |
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A liver cancer biomarker interactive curation system combining text mining and expert annotations [IASL] |
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This database serves as a research tool and an overview on variations of disease candidate genes [IASL] |
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A web application for annotating biomedical entities and relations [IASL] |
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Software for two-channel cell-based RNAi data [NHRI] |
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A software platform for GEnome-scale Metabolic model Simulation, Reconstruction and Visualization, GEMSiRV |
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A software for contig Integrator for Sequence Assembly [NHRI] |
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An automated analysis tool for label-free quantitative proteomics [IASL] |
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An automated data analysis tool for multiplexed protein quantitation based on iTRAQ labeling method [IASL] |
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An automated quantitation tool, which utilizes XICs acquired from isotope labeling techniques for quantitation analysis [IASL] |
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An automated tool for glycopeptide identification and glycan composition determination [IASL] |
- Homology & Similarity
| BLAST Search at NCKU | |
| BLAST against PDB protein databank at NTHU | |
| BLAST against Motif/Domain database at NTHU | |
| BLAST against customized database (the databases built by yourself) [NHRI, Sinica] | |
- Sequence Analysis
| Analysis Tools for Influzena Virus Surveillance [NHRI] | |
| Retrive a small peptide fragment sequence from a collection of PDB sequences [NCTU] | |
| Web-based Multiple Sequence Alignment [NTHU] | |
| Deep-sequencing small RNA analysis pipeline [NTHU, CGU] | |
| Identification and evolutionary analysis of novel exons and alternative splicing events [Sinica, NHRI] | |
| A Web interface for visualizing ESTs [Sinica, NHRI] | |
| Web-based gene prediction service [NTHU] | |
| Predict phosphorylation sites within given protein sequences [NCTU] | |
| Multiple Sequence Alignment with Constraints [NCTU] | |
| Primer Design Assistant [NHRI] | |
| A Comparative Method for Identification of Gene Structures and Alternatively Spliced Variants [Sinica, NHRI] | |
| An information repository for mRNA alternative splicing in human genome [NCTU] | |
| Identify conserved sequence elements associated to mRNA splicing [NCTU] | |
| Unique Probe Selector [Sinica, NHRI] | |
| Monitoring of human influenza variants | |
| Identification of cytotoxic T lymphocyte epitopes for swine viruses | |
- Comparative Genomics
| Web tool for Mammalian Phenotype Enrichment Analysis [NHRI] | |
| Drosophila phenotype enrichment analysis for insect functional genomics [NHRI] | |
- Phylogenetic Analysis
| Phylogenetic Web Repeater [NHRI] | |
- Topology Prediction
| Prediction of protein subcellular localization [NCTU] | |
| pKNOT: the protein KNOT web server [NCTU] | |
- Structural Analysis
| Protein Structure Prediction Server [NCTU] | |
| Protein structure search [NCTU] | |
| Circular Permutation Search Aided by Ramachandran Sequential Transformation [NTHU] | |
| Generic Evolutionary Method for molecular DOCKing [NCTU] | |
| Integrated Service of Structure Similarity Search Aided by Ramachandran Sequential Transformation [NTHU] | |
| Structure Alignment by Ramachandran Search Tool [NTHU] | |
| Sequence Derived Structure Entropy [NCTU] | |
| Structural Entropy Query [NCTU] | |
| Melting Temperature Prediction : Predict thermal stability of proteins [NTHU] | |
- Miscellaneous Tools
| Annotated feature extractor from Genbank [Sinica, NHRI] | |
| A Java plugin for Cytoscape [Sinica, NHRI] | |
| European Molecular Biology Open Software Suite [NHRI] | |
| Hub OBjects Analyser, a web-based service designed to explore the essential nodes in a network [Sinica, NHRI] | |
| KEGG Pathway Search Tool [NTHU] | |
| Reniforced Merging Algorithms [NTHU] |