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Comparative Analysis of Protein Interactions for HIV-1 [NHRI]

 

Circular Permutation Database [NTHU]

 

Protein Post-Translational Modification Database [NCTU]

 

Drosophila Database of Protein Interactomes [NHRI]

 

Genome Profile Database [NTHU]

 

H. pylori Database of protein interactomes [NHRI]

  Structural Genomics Databases of Helicobacter pylori [NTHU]

 

A database index for the genome summarized information [NCTU]

  Structural Genomics Databases of Klebsiella pneumoniae [NTHU]

 

Genomic Maps for microRNA [NCTU]

 

Regulatory RNA Motifs and Elements Database [NCTU]

  Screening for low complexity DNA sequences and interspersed repeats [mirror at NCKU]
  Structural Genomics Databases of Stenotrophomonas maltophili [NTHU]
 

SNP value-added database [NCKU]

 

Disulfide Proteins Database [NCTU]

 

Tumor Associated Gene Database [NCKU]

 

The Binding Element Searching Tool [NCKU]

 

Taiwan Polymorphism Marker Database [NHRI]

  Structural Genomics Databases of Xanthomonas campestris [NTHU]
 
 
v AnalysisTools Online
- Homology & Similarity
  BLAST Search at NCKU
  BLAST against PDB protein databank at NTHU
  BLAST against Motif/Domain database at NTHU
  BLAST against customized database (the databases built by yourself) [NHRI, Sinica]
     
- Sequence Analysis
  Analysis Tools for Influzena Virus Surveillance [NHRI]
  Retrive a small peptide fragment sequence from a collection of PDB sequences [NCTU]
  Web-based Multiple Sequence Alignment [NTHU]
  A database of copy number variations across vertebrate genomes [Sinica, NHRI]
  Identification and evolutionary analysis of novel exons and alternative splicing events [Sinica, NHRI]
  A Web interface for visualizing ESTs [Sinica, NHRI]
  Web-based gene prediction service [NTHU]
  Genetic Programming for RNA Motifs [NCTU]
  Predict phosphorylation sites within given protein sequences [NCTU]
  Multiple Sequence Alignment with Constraints [NCTU]
  Primer Design Assistant [NHRI]
  A Comparative Method for Identification of Gene Structures and Alternatively Spliced Variants [Sinica, NHRI]
  RNA Motif Search Tool [NCTU]
  An information repository for mRNA alternative splicing in human genome [NCTU]
  Identify conserved sequence elements associated to mRNA splicing [NCTU]
  Unique Probe Selector [Sinica, NHRI]
   
- Phylogenetic Analysis
  Phylogenetic reconstruction by Automatic Likelihood Model selector [Sinica, NHRI]
  Phylogenetic Web Repeater [NHRI]
     
- Topology Prediction
  Prediction of protein subcellular localization [NCTU]
  pKNOT: the protein KNOT web server [NCTU]
     
- Structural Analysis
  Protein Structure Prediction Server [NCTU]
  Protein structure search [NCTU]
  Circular Permutation Search Aided by Ramachandran Sequential Transformation [NTHU]
  Generic Evolutionary Method for molecular DOCKing [NCTU]
  Integrated Service of Structure Similarity Search Aided by Ramachandran Sequential Transformation [NTHU]
  Sequence analysis and structure prediction [mirror at NTHU]
  Structure Alignment by Ramachandran Search Tool [NTHU]
  Sequence Derived Structure Entropy [NCTU]
  Structural Entropy Query [NCTU]
  Melting Temperature Prediction : Predict thermal stability of proteins [NTHU]
   
- Miscellaneous Tools
  A Java plugin for Cytoscape [Sinica, NHRI]
  European Molecular Biology Open Software Suite [NHRI]
  EMBOSS Graphical User Interface: EMBOSS explorer [NHRI]
  Wisconsin Sequence Analysis Package [NHRI]
  Hub OBjects Analyser, a web-based service designed to explore the essential nodes in a network [Sinica, NHRI]
  Java user interface of EMBOSS [NHRI]
  KEGG Pathway Search Tool [NTHU]
  Reniforced Merging Algorithms [NTHU]
  Web-based GCG [NHRI]

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